Journal Club/Workshop on Analysis of Biological Pathways
 

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Organized by  Baltazar Aguda   bdaguda@gmail.com  and sponsored by the Mathematical Biosciences Institute & the Center for Critical Care at the Ohio State University Medical Center.

 

                                        MEETING SCHEDULE

                                                  Unless stated otherwise, the schedule is Thursdays at 4 pm.

Date

Topics & Activities

 

January 17, 2008

Room 160 DHLRI (Davis Heart & Lung Research Institute)

 

Introduction to Pathways Databases (Baltz).  Here’s a comprehensive internet portal to over 200 pathways databases online:  http://pathguide.org . (For those who are serious in learning more about pathways databases, read our tutorial lecture notes presented in an international conference in 2006).

Introduction to Ingenuity Pathways Analysis (IPA) software (Baltz). 

Introductory ppt slides for this meeting.

Tutorial video to be viewed today (you can view it in advance by clicking the link below).  A discussion follows after the video.

IPA as a Search and Exploratory Tool: Search and My Pathways in IPA v.5.5 [Versions as of 3 January 2008. Flash Player needed to view the videos. Flash Player is available   from here.  Here is the complete IPA Manual. ]

Here’s a set of snapshots (ppt slides) of the above video (prepared by Baltz) containing the key ideas (for those of you who do not have time to view the video).

Note:  Get a free 2-week trial access to IPA.  Register at  https://analysis.ingenuity.com/pa/login/applet.jsp  (You can also access IPA at this address).

 

 

January 24, 2008

Room 160 DHLRI (Davis Heart & Lung Research Institute)

 

Breast cancer pathways extracted from IPA.

Tutorial video to be viewed today (you can view this in advance by clicking the link below).  A discussion follows after the video.

Large-Scale Data Analysis: Analyzing your Data in the Context of Functions and Pathways in IPA v.5.5  [Versions as of 3 January 2008. Flash Player needed to view the videos. Flash Player is available   from here.  Here is the complete IPA Manual. ]

Here’s a set of snapshots (ppt slides) of the above video (prepared by Baltz) containing the key ideas (for those of you who do not have time to view the video).

 

 

 

January 31, 2008

Room 159 DHLRI (Davis Heart & Lung Research Institute)

Note room change for today only.

 

Tutorial video to be viewed today (you can view this in advance by clicking the link below).  A discussion follows after the video.

Large-Scale Data Analysis: Analyzing your Data in the Context of Network Analysis in IPA v.5.5  [Versions as of 3 January 2008. Flash Player needed to view the videos. Flash Player is available   from here.  Here is the complete IPA Manual. ]

Here’s a set of snapshots (ppt slides) of the above video (prepared by Baltz) containing the key ideas (for those of you who do not have time to view the video).

 

 

 

February 7, 2008

Room 160 DHLRI (Davis Heart & Lung Research Institute)

 

Short introduction about Biomarkers.

Tutorial video to be viewed today (you can view this in advance by clicking the link below).  A discussion follows after the video.

Biomarker Filter and Comparison Analysis in IPA v.5.5  [Versions as of 3 January 2008. Flash Player needed to view the videos. Flash Player is available   from here.  Here is the complete IPA Manual. ]

Here’s a set of snapshots (ppt slides) of the above video (prepared by Baltz) containing the key ideas (for those of you who do not have time to view the video).

 

 

 

February 14, 21 & 28, 2008

 

 

No meetings.

 

March 6, 2008

Room 160 DHLRI (Davis Heart & Lung Research Institute)

 

 

Short introduction on Metabolomics.

Tutorial video to be viewed today (you can view this in advance by clicking the link below).  A discussion follows after the video.

Metabolomics Analysis in IPA v5.5  [Versions as of 3 January 2008. Flash Player needed to view the videos. Flash Player is available   from here.  Here is the complete IPA Manual. ]

Here’s a set of snapshots (ppt slides) of the above video (prepared by Baltz) containing the key ideas (for those of you who do not have time to view the video).

 

 

March 13, 2008

Room 360 MBI (Jennings Hall)

Please note room change.

 

 

Short introduction on Molecular Toxicology.

Tutorial video to be viewed today (you can view this in advance by clicking the link below).  A discussion follows after the video.

Molecular Toxicology Analysis in IPA v.5.5  [Versions as of 3 January 2008. Flash Player needed to view the videos. Flash Player is available   from here.  Here is the complete IPA Manual. ]

Here’s a set of snapshots (ppt slides) of the above video (prepared by Baltz) containing the key ideas (for those of you who do not have time to view the video).